SMTL ID : 9f71.1

BAZ2A bromodomain in complex with acetylpyrrole derivative compound 26-TND18

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x 01: 1-[2,4-dimethyl-5-[(3~{R})-3-[4-(pyrrolidin-1-ylmethyl)-1~{H}-pyrazol-3-yl]piperidin-1-yl]carbonyl-1~{H}-pyrrol-3-yl]ethanone

01.1: 10 residues within 4Å: Chain A: W.23, P.24, E.27, V.29, V.34, Y.37, F.79, N.80, V.86 Ligands: EDO.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.27, A:V.34, A:Y.37, A:F.79, A:V.86, A:V.86 Hydrogen bonds: A:E.27, A:N.80

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: V.29, N.30, L.33 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.30

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalle Vedove, A. et al., Unusual backfolded binding poses of BAZ2A bromodomain binders. To Be Published

Release Date

2025-05-14

Peptides

Bromodomain adjacent to zinc finger domain protein 2A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2A

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