SMTL ID : 9f7k.1

Glutathione transferase epsilon 1 from Drosophila melanogaster in complex with glutathione

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: V.26, L.27, N.28, Y.81, A.82, K.83, S.84, E.86, L.87 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.83, A:S.84, A:S.84 Water bridges: A:L.27, A:S.84, A:S.84 GOL.6: 7 residues within 4Å: Chain B: V.26, L.27, A.82, K.83, S.84, E.86, L.87 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.83, B:S.84, B:S.84, B:S.84, B:E.86 Water bridges: B:L.87

2 x GSH: GLUTATHIONE(Non-covalent)

GSH.2: 15 residues within 4Å: Chain A: S.14, C.16, L.38, H.43, Q.54, H.55, T.56, V.57, P.58, D.69, S.70, H.71, Y.110 Chain B: S.107 Ligands: GS8.3 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.56, A:Y.110 Hydrogen bonds: A:V.57, A:V.57, A:S.70, B:S.107 Water bridges: A:H.43, A:V.57, A:D.69, A:H.71 Salt bridges: A:H.43, A:H.55, A:H.71 GSH.4: 16 residues within 4Å: Chain A: S.107 Chain B: S.14, C.16, L.38, H.43, Q.54, H.55, T.56, V.57, P.58, D.69, S.70, H.71, Y.110, R.118 Ligands: GS8.5 16 PLIP interactions: 14 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:T.56, B:Y.110 Hydrogen bonds: B:V.57, B:V.57, B:S.70, B:Y.110, B:R.118, A:S.107, A:S.107 Water bridges: B:H.43, B:V.57, B:D.69 Salt bridges: B:H.43, B:H.55, B:H.71, B:R.118

2 x GS8: S-Hydroxy-Glutathione(Non-covalent)

GS8.3: 17 residues within 4Å: Chain A: S.14, P.15, C.16, L.38, H.43, Q.54, H.55, T.56, V.57, P.58, D.69, S.70, H.71, Y.110 Chain B: F.103, S.107 Ligands: GSH.2 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.110 Hydrogen bonds: A:S.14, A:C.16, A:V.57, A:V.57, A:S.70, B:S.107 Water bridges: A:H.43, A:Q.54, A:D.69, A:H.71 Salt bridges: A:H.43, A:H.55, A:H.71 GS8.5: 18 residues within 4Å: Chain A: F.103, S.107 Chain B: S.14, P.15, C.16, L.38, H.43, Q.54, H.55, T.56, V.57, P.58, D.69, S.70, H.71, Y.110, R.118 Ligands: GSH.4 17 PLIP interactions: 15 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.110 Hydrogen bonds: B:C.16, B:V.57, B:V.57, B:S.70, B:Y.110, B:R.118, A:S.107, A:S.107 Water bridges: B:H.43, B:Q.54, B:D.69, B:H.71 Salt bridges: B:H.43, B:H.55, B:H.71, B:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schwartz, M. et al., Structural and Thermodynamic Insights into Dimerization Interfaces of Drosophila Glutathione Transferases. Biomolecules (2024)

Release Date

2024-09-04

Peptides

GH14654p: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

GH14654p