SMTL ID : 9f7q.1

SARS-CoV-2 papain-like protease (PLpro) C112S mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.190, T.192, C.193, C.225, C.227, K.229 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225, A:C.227

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: D.165, P.248, P.249, Y.265, N.268, Y.269, Y.274, T.302 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.165, A:Y.274

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: H.74, N.129, P.130, Q.175, H.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.129 Salt bridges: A:H.74, A:H.176 SO4.4: 2 residues within 4Å: Chain A: N.14, T.55 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.14 SO4.5: 3 residues within 4Å: Chain A: S.294, S.295, E.296 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.295 SO4.6: 3 residues within 4Å: Chain A: D.62, D.63, T.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.63, A:T.64 SO4.7: 2 residues within 4Å: Chain A: P.97, Q.98 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.98 SO4.8: 5 residues within 4Å: Chain A: Q.122, Q.123, I.124, E.125, R.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.123, A:R.141 SO4.9: 1 residues within 4Å: Chain A: K.280 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.280 SO4.10: 2 residues within 4Å: Chain A: A.250, Q.251 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A., SARS-CoV-2 papain-like protease (PLpro) C112S mutant. To Be Published

Release Date

2025-05-14

Peptides

Replicase polyprotein 1ab: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replicase polyprotein 1ab

Related Entries With Identical Sequence