SMTL ID : 9f7t.1

SARS-CoV-2 papain-like protease (PLpro) C112S-K191D-K229R mutant: dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: W.107, T.266, G.267, C.271, G.272, H.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.266 PEG.6: 6 residues within 4Å: Chain B: W.107, T.266, G.267, C.271, G.272, H.273 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.266

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.139, E.144 Chain B: I.15 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: F.259, T.260, Y.306, K.307 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: I.15 Chain B: R.139, E.144 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: F.259, T.260, Y.306, K.307 Ligand excluded by PLIP

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: C.190, T.192, C.193, C.225, C.227, R.229 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.190, A:C.193, A:C.225, A:C.227 ZN.9: 6 residues within 4Å: Chain B: C.190, T.192, C.193, C.225, C.227, R.229 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.190, B:C.193, B:C.225, B:C.227

2 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: L.121, Q.122, I.124, E.125, L.126, Y.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.121, A:I.124, A:Y.137 NA.10: 6 residues within 4Å: Chain B: L.121, Q.122, I.124, E.125, L.126, Y.137 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.124, B:Y.137, B:Y.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A., SARS-CoV-2 papain-like protease (PLpro) C112S-K191D-K229R mutant. To Be Published

Release Date

2025-05-14

Peptides

Replicase polyprotein 1ab: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Replicase polyprotein 1ab

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