SMTL ID : 9f7u.1

SARS-CoV-2 papain-like protease (PLpro) C112S-K191D-Q222D-K229R-Q230R-C271S mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x MLA: MALONIC ACID(Non-covalent)

MLA.1: 9 residues within 4Å: Chain A: W.107, N.110, N.111, S.112, L.163, Y.265, G.272, H.273, Y.274 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:N.110 Hydrogen bonds: A:W.107, A:S.112, A:S.112, A:G.272 Water bridges: A:Y.113, A:G.272, A:G.272 Salt bridges: A:H.273, A:H.273

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.167, E.168, S.171, Y.172, Q.175 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.171, A:Q.175

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: L.121, Q.122, I.124, E.125, L.126, Y.137 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.124, A:I.124, A:L.126 NA.4: 5 residues within 4Å: Chain A: N.129, Q.175, A.177, N.178, L.179 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.129, A:A.177 NA.5: 1 residues within 4Å: Chain A: R.141 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.141

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: K.127, F.128, Q.134, Y.137 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: H.74, N.129, P.130, H.176 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A., SARS-CoV-2 papain-like protease (PLpro) C112S-K191D-Q222D-K229R-Q230R-C271S mutant. To Be Published

Release Date

2025-05-14

Peptides

Replicase polyprotein 1ab: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Replicase polyprotein 1ab

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