SMTL ID : 9f8c.1

Crystal structure of human monoacylglycerol lipase in complex with compound 7m

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x 01: (4~{a}~{R},8~{a}~{R})-6-[4-[[4-(trifluoromethyl)phenyl]methyl]piperidin-1-yl]carbonyl-4,4~{a},5,7,8,8~{a}-hexahydropyrido[4,3-b][1,4]oxazin-3-one

01.1: 23 residues within 4Å: Chain A: G.70, A.71, E.73, R.77, H.141, S.142, M.143, L.168, A.171, S.175, A.176, F.179, I.199, L.204, Y.214, L.225, G.230, L.233, L.234, V.237, L.261, H.289, V.290 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.168, A:A.171, A:F.179, A:F.179, A:L.204, A:L.225, A:L.233, A:L.233, A:L.261 Hydrogen bonds: A:A.71, A:R.77, A:H.141, A:M.143 Halogen bonds: A:G.230

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) NA.3: 2 residues within 4Å: Chain A: Y.131, P.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.131

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: R.53, H.74, G.76, D.217 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.53 Water bridges: A:R.53, A:R.53, A:D.217, A:D.217 EDO.5: 7 residues within 4Å: Chain A: Q.32, G.101, R.107, P.218, L.219, I.220, C.221 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.32, A:G.101, A:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kuhn, B. et al., Structure-Guided Discovery of cis -Hexahydro-pyrido-oxazinones as Reversible, Drug-like Monoacylglycerol Lipase Inhibitors. J.Med.Chem. (2024)

Release Date

2025-01-22

Peptides

Monoglyceride lipase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Monoglyceride lipase

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