SMTL ID : 9fae.1

Human adenovirus type 36 fiber knob in complex with 4-O-acetyl-3'-sialyllactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

homo-trimer

Ligands

1 x GAL- PKM: 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid-(2-3)-beta-D-galactopyranose(Non-covalent)

GAL-PKM.1: 11 residues within 4Å: Chain B: N.313, Y.315, V.320, Y.321, P.323, K.350 Chain C: V.311, N.313, F.325, G.349, V.351 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain B Water bridges: C:G.349, C:V.351, B:K.350 Hydrophobic interactions: C:V.311, C:F.325, B:Y.315, B:V.320 Hydrogen bonds: C:N.313, C:W.348, B:V.320 Salt bridges: B:K.350

2 x PKM: 4-O-acetyl-5-acetamido-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid(Non-covalent)

PKM.2: 11 residues within 4Å: Chain A: N.313, Y.315, V.320, Y.321, P.323, K.350 Chain B: V.311, N.313, G.324, F.325, G.349 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:Y.315, A:V.320, B:V.311, B:F.325 Hydrogen bonds: A:Y.315, A:V.320, B:N.313 Water bridges: A:N.313 Salt bridges: A:K.350 PKM.3: 10 residues within 4Å: Chain A: V.311, N.313, F.325, G.349 Chain C: N.313, Y.315, V.320, Y.321, P.323, K.350 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:Y.315, C:V.320, A:V.311, A:F.325 Hydrogen bonds: C:V.320, A:N.313 Salt bridges: C:K.350

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liaci, A.M. et al., Extended receptor repertoire of an adenovirus associated with human obesity. Plos Pathog. (2025)

Release Date

2025-01-22

Peptides

Fiber: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fiber

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