SMTL ID : 9fb3.1

Human Aldose Reductase in Complex with a Covalent Ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.33 Å

Oligo State

monomer

Ligands

1 x 01: ethyl 3-ethanoylbicyclo[1.1.1]pentane-1-carboxylate

01.1: 11 residues within 4Å: Chain A: W.21, V.48, Y.49, W.80, H.111, W.112, F.123, V.298, C.299, A.300 Ligands: NAP.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.21, A:W.21, A:V.48, A:W.112 Water bridges: A:H.111 Salt bridges: A:H.111

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 33 residues within 4Å: Chain A: G.19, T.20, W.21, K.22, D.44, Y.49, K.78, H.111, W.112, S.160, N.161, Q.184, Y.210, S.211, P.212, L.213, G.214, S.215, P.216, D.217, L.229, A.246, I.261, P.262, K.263, S.264, V.265, T.266, R.269, E.272, N.273, C.299 Ligands: 01.1 36 PLIP interactions: 36 interactions with chain A Hydrophobic interactions: A:W.21 Hydrogen bonds: A:T.20, A:W.21, A:D.44, A:H.111, A:W.112, A:N.161, A:Q.184, A:Y.210, A:S.211, A:S.211, A:L.213, A:S.215, A:S.215, A:S.215, A:D.217, A:D.217, A:K.263, A:S.264, A:V.265, A:T.266, A:T.266, A:E.272, A:N.273 Water bridges: A:A.246, A:K.263, A:R.269, A:R.269, A:R.269, A:R.269 Salt bridges: A:K.22, A:K.22, A:K.263, A:R.269 pi-Stacking: A:Y.210 pi-Cation interactions: A:R.269

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.3: 6 residues within 4Å: Chain A: N.9, G.10, A.11, Y.104, G.152, K.155 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.155

5 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 9 residues within 4Å: Chain A: H.188, Y.190, G.214, R.218, P.226, S.227, L.228, W.296, V.298 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.228 Water bridges: A:L.229 DMS.5: 7 residues within 4Å: Chain A: N.161, F.162, N.163, I.185, Q.193, L.196, R.297 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.193, A:R.297, A:R.297 DMS.6: 4 residues within 4Å: Chain A: K.22, D.217, R.218, P.219 No protein-ligand interaction detected (PLIP) DMS.7: 5 residues within 4Å: Chain A: L.6, L.7, N.8, G.204, V.206 No protein-ligand interaction detected (PLIP) DMS.8: 1 residues within 4Å: Chain A: W.220 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Klee, L.-S. et al., Human Aldose Reductase in Complex with a Covalent Ligand. To Be Published

Release Date

2025-05-21

Peptides

aldose reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

aldose reductase

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