SMTL ID : 9fbx.1

C-TERMINAL BROMODOMAIN OF HUMAN BRD2 WITH 5-(1-benzyl-4-chloro-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: Q.103, D.104, E.107, F.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.104 EDO.2: 3 residues within 4Å: Chain A: K.62, D.67, E.73 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.62, A:K.62, A:E.73

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.3: 8 residues within 4Å: Chain A: M.3, S.7, L.10, K.11, N.14, M.63, E.64, R.66 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.66 Hydrogen bonds: A:K.11, A:N.14 Water bridges: A:R.66

1 x 01: 5-(1-benzyl-4-chloro-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one

01.4: 10 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.41, L.43, Y.88, N.89, V.95, M.98 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.30, A:P.31, A:P.31, A:L.41, A:L.43, A:Y.88, A:V.95, A:V.95 Hydrogen bonds: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hirst, D.J. et al., Structure- and Property-Based Optimization of Efficient Pan-Bromodomain and Extra Terminal Inhibitors to Identify Oral and Intravenous Candidate I-BET787. J.Med.Chem. (2024)

Release Date

2024-06-26

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 2

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