SMTL ID : 9fhf.2 (1 other biounit)

Crystal structure of human Glucose-6-phosphate isomerase with dihydroxyacetone phosphate ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 10 residues within 4Å: Chain A: R.21, L.59, F.331, T.399, K.400, M.401, N.471, R.472, P.473 Chain B: R.370 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.471 PEG.4: 9 residues within 4Å: Chain B: R.21, L.59, F.331, K.400, M.401, G.470, N.471, R.472, P.473 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.21, B:K.400

2 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)

13P.2: 12 residues within 4Å: Chain A: I.157, G.158, G.159, S.160, S.210, K.211, T.212, T.215, G.272, Q.354, K.519 Chain B: H.389 13 PLIP interactions: 1 interactions with chain B, 12 interactions with chain A Hydrogen bonds: B:H.389, A:G.159, A:S.160, A:S.210, A:S.210, A:S.210, A:K.211, A:T.212, A:T.212, A:T.215, A:Q.354 Water bridges: A:I.157, A:E.358 13P.3: 14 residues within 4Å: Chain A: H.389 Chain B: I.157, G.158, G.159, S.160, S.210, K.211, T.212, F.213, T.215, T.218, Q.354, V.515, K.519 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.159, B:S.160, B:S.210, B:S.210, B:S.210, B:K.211, B:T.212, B:T.212, B:T.215, B:K.519, A:H.389 Water bridges: B:T.218, B:Q.354

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jonatansdottir, Y.Y. et al., Human glycolysis isomerases are inhibited by weak metabolite modulators. Febs J. (2025)

Release Date

2025-03-12

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
B

Glucose-6-phosphate isomerase

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