SMTL ID : 9fll.1

Crystal structure of the C-terminal domain of VldE from Streptococcus pneumoniae containing a zinc atom at the binding site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 1 residues within 4Å: Ligands: CD.2 No protein-ligand interaction detected (PLIP)

1 x CD: CADMIUM ION(Non-covalent)

CD.2: 3 residues within 4Å: Chain A: E.28, N.32 Ligands: ACT.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.28, ACT.1

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: R.43, H.50, D.57, E.117, H.124 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.57, A:D.57, A:E.117, A:H.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miguel-Ruano, V. et al., Characterization of VldE (Spr1875), a Pneumococcal Two-State l,d-Endopeptidase with a Four-Zinc Cluster in the Active Site. Acs Catalysis (2024)

Release Date

2025-01-22

Peptides

LysM domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AA

LysM domain-containing protein

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