SMTL ID : 9fnb.1

TMEM106B filaments from Biondi bodies (Biondi variant)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

16 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 5 residues within 4Å: Chain A: L.25, N.26 Chain C: N.26 Ligands: NAG.9, NAG.13 Ligand excluded by PLIP NAG.2: 5 residues within 4Å: Chain A: N.32, T.34 Chain C: N.32 Ligands: NAG.10, NAG.14 Ligand excluded by PLIP NAG.3: 4 residues within 4Å: Chain A: N.45 Chain C: N.45 Ligands: NAG.11, NAG.15 Ligand excluded by PLIP NAG.4: 6 residues within 4Å: Chain A: N.63, N.64 Chain C: N.63, N.64 Ligands: NAG.12, NAG.16 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain B: L.25, N.26 Ligands: NAG.9 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain B: N.32, T.34 Ligands: NAG.10 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain B: N.45 Ligands: NAG.11 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain B: N.63, N.64 Ligands: NAG.12 Ligand excluded by PLIP NAG.9: 5 residues within 4Å: Chain B: N.26 Chain C: L.25, N.26 Ligands: NAG.1, NAG.5 Ligand excluded by PLIP NAG.10: 5 residues within 4Å: Chain B: N.32 Chain C: N.32, T.34 Ligands: NAG.2, NAG.6 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain B: N.45 Chain C: N.45 Ligands: NAG.3, NAG.7 Ligand excluded by PLIP NAG.12: 6 residues within 4Å: Chain B: N.63, N.64 Chain C: N.63, N.64 Ligands: NAG.4, NAG.8 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain A: N.26 Chain D: L.25, N.26 Ligands: NAG.1 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain A: N.32 Chain D: N.32, T.34 Ligands: NAG.2 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain A: N.45 Chain D: N.45 Ligands: NAG.3 Ligand excluded by PLIP NAG.16: 5 residues within 4Å: Chain A: N.63, N.64 Chain D: N.63, N.64 Ligands: NAG.4 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ghetti, B. et al., TMEM106B amyloid filaments in the Biondi bodies of ependymal cells. Acta Neuropathol (2024)

Release Date

2024-11-20

Peptides

Transmembrane protein 106B: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Transmembrane protein 106B

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