SMTL ID : 9foa.1

Artificial photoenzyme with anthraquinone cofactor and wild type streptavidin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.36 Å

Oligo State

homo-tetramer

Ligands

4 x 01: ~{N}-[4-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]butyl]-9,10-bis(oxidanylidene)anthracene-2-carboxamide

01.1: 28 residues within 4Å: Chain A: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, T.111, S.112, K.121, S.122, T.123, L.124, D.128 Chain C: W.120, K.121, L.124 Ligands: GOL.2, 01.9 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:A.50, A:W.79, A:W.79, A:L.124, A:L.124, C:W.120, C:L.124 Hydrogen bonds: A:N.23, A:S.27, A:Y.43, A:S.45, A:N.49, A:S.88, A:S.112, A:D.128 01.5: 28 residues within 4Å: Chain B: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, T.111, S.112, K.121, S.122, T.123, L.124, D.128 Chain D: W.120, K.121, L.124 Ligands: GOL.6, 01.13 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:A.50, B:W.79, B:W.79, B:L.124, B:L.124, D:W.120, D:L.124 Hydrogen bonds: B:N.23, B:S.27, B:Y.43, B:S.45, B:N.49, B:S.88, B:S.112, B:D.128 01.9: 28 residues within 4Å: Chain A: W.120, K.121, L.124 Chain C: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, T.111, S.112, K.121, S.122, T.123, L.124, D.128 Ligands: 01.1, GOL.10 15 PLIP interactions: 13 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:A.50, C:W.79, C:W.79, C:L.124, C:L.124, A:W.120, A:L.124 Hydrogen bonds: C:N.23, C:S.27, C:Y.43, C:S.45, C:N.49, C:S.88, C:S.112, C:D.128 01.13: 28 residues within 4Å: Chain B: W.120, K.121, L.124 Chain D: N.23, L.25, S.27, Y.43, S.45, V.47, G.48, N.49, A.50, W.79, A.86, S.88, T.90, W.92, W.108, L.110, T.111, S.112, K.121, S.122, T.123, L.124, D.128 Ligands: 01.5, GOL.14 15 PLIP interactions: 13 interactions with chain D, 2 interactions with chain B Hydrophobic interactions: D:A.50, D:W.79, D:W.79, D:L.124, D:L.124, B:W.120, B:L.124 Hydrogen bonds: D:N.23, D:S.27, D:Y.43, D:S.45, D:N.49, D:S.88, D:S.112, D:D.128

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: V.47, G.48, N.49 Chain C: N.118, W.120, K.121 Ligands: 01.1, SO4.4 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:G.48, A:G.48, C:K.121 GOL.3: 7 residues within 4Å: Chain A: A.63, P.64, A.65, T.66 Chain D: K.80, N.85, H.87 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:P.64, D:N.85 Water bridges: D:H.87 GOL.6: 8 residues within 4Å: Chain B: V.47, G.48, N.49 Chain D: N.118, W.120, K.121 Ligands: 01.5, SO4.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:G.48, B:G.48, D:K.121 GOL.7: 7 residues within 4Å: Chain B: A.63, P.64, A.65, T.66 Chain C: K.80, N.85, H.87 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:N.85, B:P.64 Water bridges: C:H.87 GOL.10: 8 residues within 4Å: Chain A: N.118, W.120, K.121 Chain C: V.47, G.48, N.49 Ligands: 01.9, SO4.12 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:K.121, C:G.48, C:G.48 GOL.11: 7 residues within 4Å: Chain B: K.80, N.85, H.87 Chain C: A.63, P.64, A.65, T.66 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:N.85, C:P.64 Water bridges: B:H.87 GOL.14: 8 residues within 4Å: Chain B: N.118, W.120, K.121 Chain D: V.47, G.48, N.49 Ligands: 01.13, SO4.16 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrogen bonds: B:K.121, D:G.48, D:G.48 GOL.15: 7 residues within 4Å: Chain A: K.80, N.85, H.87 Chain D: A.63, P.64, A.65, T.66 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:N.85, D:P.64 Water bridges: A:H.87

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: R.84 Ligands: GOL.2 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.84 SO4.8: 2 residues within 4Å: Chain B: R.84 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.84 SO4.12: 2 residues within 4Å: Chain C: R.84 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.84 SO4.16: 2 residues within 4Å: Chain D: R.84 Ligands: GOL.14 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., Artificial Metalloenzymes with Two Catalytic Cofactors for Tandem Abiotic Transformations. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-01-15

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
D

C
D

D
D

Streptavidin

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