SMTL ID : 9foe.1

Crystal structure of the PWWP1 domain of NSD2 bound by compound 7.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x 01: 1-[[(2~{S})-1-[4-[ethyl(pyridin-4-ylmethyl)amino]-6-methyl-pyrimidin-2-yl]pyrrolidin-2-yl]methyl]urea

01.1: 9 residues within 4Å: Chain A: Y.30, W.33, F.63, F.64, G.65, D.66, A.67, E.69, Q.118 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.30, A:W.33, A:W.33, A:F.63, A:F.63, A:E.69 Hydrogen bonds: A:D.66, A:D.66, A:A.67, A:E.69, A:E.69, A:Q.118 pi-Stacking: A:Y.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collie, G.W. et al., Structural and Molecular Insight into the PWWP1 Domain of NSD2 from the Discovery of Novel Binders Via DNA-Encoded Library Screening. Acs Med.Chem.Lett. (2025)

Release Date

2025-09-03

Peptides

Histone-lysine N-methyltransferase NSD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase NSD2