SMTL ID : 9fow.2 (2 other biounits)

GPR180 N-terminal domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x NAG- FUC- NAG- FUC: alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-NAG-FUC.1: 8 residues within 4Å: Chain A: L.32, C.34, E.87, H.88, N.89, L.130, N.131, P.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.32, A:P.132

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: E.47, K.49, Y.51, S.71, L.74, A.106, D.107, K.108, T.110, C.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.49, A:D.107 Water bridges: A:C.111 GOL.4: 7 residues within 4Å: Chain A: G.6, S.7, Q.19, S.20, I.21, F.125, F.145 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.7, A:Q.19

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: Q.78, L.79, T.91, V.92, S.93, W.101 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.78 Hydrogen bonds: A:S.93 ACT.5: 5 residues within 4Å: Chain A: V.81, T.84, Q.85, H.88, N.89 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mitrovic, S.A. et al., GPR180 a new member of the Golgi-dynamics domain seven-transmembrane helix protein family. To Be Published

Release Date

2024-10-16

Peptides

Integral membrane protein GPR180: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Integral membrane protein GPR180

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