SMTL ID : 9frt.1 (1 other biounit)

Crystal structure of trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from Pseudomonas fluorescens N3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: A.168, P.170, Y.196, L.197, G.198 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.168, A:L.197, A:G.198 Water bridges: A:G.198 GOL.4: 8 residues within 4Å: Chain B: A.168, P.170, F.177, R.179, W.182, Y.196, L.197, G.198 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.177, B:R.179, B:L.197, B:G.198 Water bridges: B:G.198, B:G.198 GOL.7: 6 residues within 4Å: Chain C: A.168, P.170, D.176, Y.196, L.197, G.198 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:D.176, C:L.197, C:G.198 Water bridges: C:R.179, C:Y.196, C:G.198 GOL.10: 8 residues within 4Å: Chain D: A.168, D.176, F.177, R.179, W.182, Y.196, L.197, G.198 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:F.177, D:R.179, D:L.197, D:G.198 Water bridges: D:G.198

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 7 residues within 4Å: Chain A: G.76, T.77, F.78, Y.167, K.195, W.236, N.293 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.77, A:F.78, A:Y.167, A:Y.167, A:N.293 Water bridges: A:G.76, A:G.79 Salt bridges: A:K.195 PO4.3: 4 residues within 4Å: Chain A: D.144, L.145, P.146 Chain C: K.291 5 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A, 1 interactions with chain C Water bridges: B:R.283, B:R.283, B:D.285 Hydrogen bonds: A:L.145 Salt bridges: C:K.291 PO4.5: 6 residues within 4Å: Chain B: G.76, T.77, F.78, Y.167, K.195, N.293 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:T.77, B:F.78, B:Y.167, B:Y.167, B:N.293 Water bridges: B:G.76, B:G.79 Salt bridges: B:K.195 PO4.6: 3 residues within 4Å: Chain B: D.144, L.145 Chain D: K.291 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain D Hydrogen bonds: B:L.145 Water bridges: D:K.291, D:K.291 Salt bridges: D:K.291 PO4.8: 6 residues within 4Å: Chain C: G.76, T.77, F.78, Y.167, K.195, N.293 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:T.77, C:F.78, C:Y.167, C:N.293, C:N.293 Water bridges: C:G.76, C:G.79, C:N.169, C:N.169, C:K.195, C:K.195 Salt bridges: C:K.195 PO4.9: 2 residues within 4Å: Chain C: R.101, R.103 1 PLIP interactions: 1 interactions with chain C Salt bridges: C:R.101 PO4.11: 8 residues within 4Å: Chain D: I.34, G.76, T.77, F.78, Y.167, K.195, W.236, N.293 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:T.77, D:F.78, D:Y.167, D:N.293 Water bridges: D:G.76, D:G.79, D:N.169, D:N.169 Salt bridges: D:K.195 PO4.12: 3 residues within 4Å: Chain B: K.291 Chain D: D.144, L.145 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain D Water bridges: B:K.291, B:Y.292 Salt bridges: B:K.291 Hydrogen bonds: D:L.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrara, S. et al., Structural snapshots of the aldol condensation reaction of the enzyme trans-o-hydroxybenzylidenepyruvate hydratase-aldolase from Pseudomonas fluorescens N3. Biochem.Biophys.Res.Commun. (2025)

Release Date

2025-06-25

Peptides

Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase

Related Entries With Identical Sequence