SMTL ID : 9fs1.1

Mutant S1538L of the dihydroorotase domain of human CAD protein bound to carbamoyl aspartate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.21 Å

Oligo State

monomer

Ligands

1 x NCD: N-CARBAMOYL-L-ASPARTATE(Non-covalent)

NCD.1: 19 residues within 4Å: Chain A: H.12, H.14, R.16, N.46, K.97, Y.99, T.103, F.104, H.131, H.155, V.201, R.202, D.227, A.229, H.231, P.243, G.244 Ligands: ZN.2, ZN.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.46, A:T.103, A:R.202, A:R.202, A:P.243, A:P.243 Salt bridges: A:H.12, A:H.14, A:H.14, A:R.16, A:H.131, A:H.155, A:H.231

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 8 residues within 4Å: Chain A: H.12, H.14, M.44, K.97, H.155, D.227 Ligands: NCD.1, ZN.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.12, A:H.14, A:D.227 ZN.3: 8 residues within 4Å: Chain A: H.12, K.97, Y.99, T.103, H.131, H.155 Ligands: NCD.1, ZN.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.131, A:H.155 ZN.5: 4 residues within 4Å: Chain A: H.12, M.44, C.154, E.178 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.12, A:C.154, A:E.178, A:E.178, H2O.7 ZN.7: 1 residues within 4Å: Chain A: H.275 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.275, H2O.8, H2O.14

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 7 residues within 4Å: Chain A: P.127, I.128, V.129, R.149, S.150, V.151, H.152 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.128, A:R.149, A:S.150 Water bridges: A:S.150, A:S.150, A:T.176 FMT.6: 3 residues within 4Å: Chain A: H.275, R.278, R.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.275, A:R.278

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Del Cano-Ochoa, F. et al., Disruption of CAD Oligomerization by Pathogenic Variants. J.Mol.Biol. (2024)

Release Date

2024-12-04

Peptides

Multifunctional protein CAD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Multifunctional protein CAD