- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 44 x SPM: SPERMINE(Non-covalent)(Non-functional Binders)
- 56 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
MG.45: 3 residues within 4Å:- Chain A: A.532, A.533, A.534
No protein-ligand interaction detected (PLIP)MG.46: 2 residues within 4Å:- Chain A: A.568, A.569
No protein-ligand interaction detected (PLIP)MG.47: 2 residues within 4Å:- Chain A: A.719, G.720
No protein-ligand interaction detected (PLIP)MG.48: 6 residues within 4Å:- Chain A: A.1458, G.1462, G.1463, A.1465, G.1466
- Ligands: SPM.24
4 PLIP interactions:3 Ligand-Water interactions, 1 interactions with chain A- Metal complexes: H2O.2, H2O.4, H2O.4, A:A.1458
MG.49: 1 residues within 4Å:- Chain A: G.691
No protein-ligand interaction detected (PLIP)MG.50: 5 residues within 4Å:- Chain A: U.1456, A.1457, A.1458, G.1462, G.1463
4 PLIP interactions:3 Ligand-Water interactions, 1 interactions with chain A- Metal complexes: H2O.5, H2O.6, H2O.6, A:A.1458
MG.51: 3 residues within 4Å:- Chain A: G.465, A.468, A.469
No protein-ligand interaction detected (PLIP)MG.52: 4 residues within 4Å:- Chain A: G.96, A.97, G.98, G.295
No protein-ligand interaction detected (PLIP)MG.53: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.54: 5 residues within 4Å:- Chain A: U.944, C.945, U.946, G.1186, C.1187
No protein-ligand interaction detected (PLIP)MG.55: 5 residues within 4Å:- Chain A: G.257, U.258, G.272, C.274
- Chain K: D.8
1 PLIP interactions:1 interactions with chain K- Metal complexes: K:D.8
MG.56: 3 residues within 4Å:- Chain A: U.431, G.446, G.447
No protein-ligand interaction detected (PLIP)MG.57: 4 residues within 4Å:- Chain A: A.555, A.556, G.557, U.558
No protein-ligand interaction detected (PLIP)MG.58: 1 residues within 4Å:- Chain A: C.536
No protein-ligand interaction detected (PLIP)MG.59: 4 residues within 4Å:- Chain A: G.941, A.942, A.943, C.1327
No protein-ligand interaction detected (PLIP)MG.60: 3 residues within 4Å:- Chain A: A.933, U.1020, C.1021
No protein-ligand interaction detected (PLIP)MG.61: 2 residues within 4Å:- Chain A: C.1058, A.1060
No protein-ligand interaction detected (PLIP)MG.62: 2 residues within 4Å:- Chain A: G.1066, G.1068
No protein-ligand interaction detected (PLIP)MG.63: 3 residues within 4Å:- Chain A: A.1067, G.1068, A.1069
No protein-ligand interaction detected (PLIP)MG.64: 4 residues within 4Å:- Chain A: C.1187, C.1188, U.1286, C.1287
No protein-ligand interaction detected (PLIP)MG.65: 4 residues within 4Å:- Chain A: U.1267, G.1269, G.1270, G.1296
No protein-ligand interaction detected (PLIP)MG.66: 3 residues within 4Å:- Chain A: G.1268, G.1269
- Chain U: R.48
No protein-ligand interaction detected (PLIP)MG.67: 1 residues within 4Å:- Chain A: G.1335
No protein-ligand interaction detected (PLIP)MG.68: 3 residues within 4Å:- Chain A: U.321, U.322, G.323
No protein-ligand interaction detected (PLIP)MG.69: 2 residues within 4Å:- Chain A: G.17, U.521
No protein-ligand interaction detected (PLIP)MG.70: 2 residues within 4Å:- Chain A: G.541, G.718
No protein-ligand interaction detected (PLIP)MG.71: 4 residues within 4Å:- Chain A: U.612, A.613, G.614
- Chain Q: H.11
4 PLIP interactions:1 interactions with chain Q, 3 Ligand-Water interactions- Metal complexes: Q:H.11, H2O.1, H2O.4, H2O.10
MG.72: 2 residues within 4Å:- Chain A: U.162, A.194
No protein-ligand interaction detected (PLIP)MG.73: 2 residues within 4Å:- Chain A: A.728, G.729
No protein-ligand interaction detected (PLIP)MG.74: 3 residues within 4Å:- Chain A: G.1008, C.1179, C.1180
No protein-ligand interaction detected (PLIP)MG.75: 3 residues within 4Å:- Chain A: U.531, A.532, A.779
No protein-ligand interaction detected (PLIP)MG.76: 1 residues within 4Å:- Chain A: G.880
No protein-ligand interaction detected (PLIP)MG.77: 2 residues within 4Å:- Chain A: C.518, U.519
No protein-ligand interaction detected (PLIP)MG.78: 3 residues within 4Å:- Chain A: U.10, G.11, A.12
No protein-ligand interaction detected (PLIP)MG.79: 2 residues within 4Å:- Chain A: G.89, A.90
No protein-ligand interaction detected (PLIP)MG.80: 2 residues within 4Å:- Chain A: C.91, G.92
No protein-ligand interaction detected (PLIP)MG.81: 3 residues within 4Å:- Chain A: G.93, C.94, G.396
No protein-ligand interaction detected (PLIP)MG.82: 3 residues within 4Å:- Chain A: A.133, G.150
- Ligands: SPM.22
No protein-ligand interaction detected (PLIP)MG.83: 1 residues within 4Å:- Chain A: G.169
No protein-ligand interaction detected (PLIP)MG.84: 3 residues within 4Å:- Chain A: G.88, G.330, A.331
No protein-ligand interaction detected (PLIP)MG.85: 2 residues within 4Å:- Chain A: G.463, G.464
No protein-ligand interaction detected (PLIP)MG.86: 3 residues within 4Å:- Chain A: C.536, G.537, C.538
No protein-ligand interaction detected (PLIP)MG.87: 2 residues within 4Å:- Chain A: G.716, U.717
No protein-ligand interaction detected (PLIP)MG.88: 2 residues within 4Å:- Chain A: G.614, G.615
No protein-ligand interaction detected (PLIP)MG.89: 4 residues within 4Å:- Chain A: C.821, G.822, C.832, G.833
No protein-ligand interaction detected (PLIP)MG.90: 3 residues within 4Å:- Chain A: G.851, G.852, A.853
No protein-ligand interaction detected (PLIP)MG.91: 4 residues within 4Å:- Chain A: G.887, C.888, U.1356, G.1357
No protein-ligand interaction detected (PLIP)MG.92: 3 residues within 4Å:- Chain A: G.916, C.1187, C.1188
No protein-ligand interaction detected (PLIP)MG.93: 3 residues within 4Å:- Chain A: G.930, G.1161, G.1162
No protein-ligand interaction detected (PLIP)MG.94: 2 residues within 4Å:- Chain A: C.1156, G.1157
No protein-ligand interaction detected (PLIP)MG.95: 1 residues within 4Å:- Chain A: G.1276
No protein-ligand interaction detected (PLIP)MG.96: 3 residues within 4Å:- Chain A: A.1361, C.1362
- Chain G: E.72
3 PLIP interactions:1 interactions with chain G, 2 Ligand-Water interactions- Metal complexes: G:E.72, H2O.9, H2O.9
MG.100: 2 residues within 4Å:- Chain A: G.887
- Chain G: D.69
4 PLIP interactions:1 interactions with chain G, 3 Ligand-Water interactions- Metal complexes: G:D.69, H2O.5, H2O.9, H2O.9
MG.102: 3 residues within 4Å:- Chain A: G.261, G.272
- Chain R: L.101
3 PLIP interactions:1 interactions with chain R, 2 Ligand-Water interactions- Metal complexes: R:L.101, H2O.6, H2O.10
MG.104: 1 residues within 4Å:- Chain 4: G.2
No protein-ligand interaction detected (PLIP)MG.109: 3 residues within 4Å:- Chain 8: D.26
- Chain A: U.939, G.940
5 PLIP interactions:2 interactions with chain 8, 3 Ligand-Water interactions- Metal complexes: 8:D.26, 8:D.26, H2O.1, H2O.3, H2O.3
- 8 x ZN: ZINC ION(Non-covalent)
ZN.97: 5 residues within 4Å:- Chain D: C.34, C.37, C.57, C.60, F.62
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.34, D:C.37, D:C.57, D:C.60
ZN.98: 5 residues within 4Å:- Chain D: C.16, S.18, C.19, D.45, C.48
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.16, D:C.19, D:D.45, D:C.48
ZN.99: 5 residues within 4Å:- Chain G: C.121, C.126, C.128, G.129, H.132
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:C.121, G:C.126, G:C.128, G:H.132
ZN.101: 4 residues within 4Å:- Chain R: C.23, C.28, H.31, C.84
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:C.23, R:C.28, R:H.31, R:C.84
ZN.103: 7 residues within 4Å:- Chain W: C.21, C.24, G.25, N.26, C.40, S.42, C.43
3 PLIP interactions:3 interactions with chain W- Metal complexes: W:C.21, W:C.24, W:C.43
ZN.106: 4 residues within 4Å:- Chain 7: C.38, C.41, C.61, C.64
4 PLIP interactions:4 interactions with chain 7- Metal complexes: 7:C.38, 7:C.41, 7:C.61, 7:C.64
ZN.107: 4 residues within 4Å:- Chain 7: C.21, C.24, C.50, D.53
4 PLIP interactions:4 interactions with chain 7- Metal complexes: 7:C.21, 7:C.24, 7:C.50, 7:D.53
ZN.108: 4 residues within 4Å:- Chain 8: C.19, C.22, C.37, C.40
4 PLIP interactions:4 interactions with chain 8- Metal complexes: 8:C.19, 8:C.22, 8:C.37, 8:C.40
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bourgeois, G. et al., Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity. Nat Commun (2025)
- Release Date
- 2025-01-15
- Peptides
- Small ribosomal subunit protein eS1: B
Small ribosomal subunit protein uS2: C
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein: D
Small ribosomal subunit protein uS4: E
Small ribosomal subunit protein eS4: F
Small ribosomal subunit protein uS5: G
Small ribosomal subunit protein eS6: H
Small ribosomal subunit protein uS7: I
Small ribosomal subunit protein uS8: J
Small ribosomal subunit protein eS8: K
Small ribosomal subunit protein uS9: L
Small ribosomal subunit protein uS10: M
Small ribosomal subunit protein uS11: N
Small ribosomal subunit protein uS12: O
Small ribosomal subunit protein uS13: P
Small ribosomal subunit protein uS15: Q
Small ribosomal subunit protein uS17: R
Small ribosomal subunit protein eS17: S
Small ribosomal subunit protein uS19: T
Small ribosomal subunit protein eS19: U
Small ribosomal subunit protein eS24: V
Small ribosomal subunit protein eS27: W
Small ribosomal subunit protein eS28: X
Small ribosomal subunit protein eS31: Y
Small ribosomal subunit protein uS3: Z
Large ribosomal subunit protein eL8: 0
Small ribosomal subunit protein eS25: 1
VapB-type antitoxin: 2
LSU ribosomal protein S30E (Rps30E): 3
aS34: 7
Small ribosomal subunit protein uS14: 8 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
AC
BD
CE
DF
EG
FH
GI
HJ
IK
JL
KM
LN
MO
NP
OQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
31
c2
d3
e7
a8
P
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
- Ligands
- 44 x SPM: SPERMINE(Non-covalent)(Non-functional Binders)
- 56 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
- 8 x ZN: ZINC ION(Non-covalent)
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bourgeois, G. et al., Structures of Saccharolobus solfataricus initiation complexes with leaderless mRNAs highlight archaeal features and eukaryotic proximity. Nat Commun (2025)
- Release Date
- 2025-01-15
- Peptides
- Small ribosomal subunit protein eS1: B
Small ribosomal subunit protein uS2: C
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein: D
Small ribosomal subunit protein uS4: E
Small ribosomal subunit protein eS4: F
Small ribosomal subunit protein uS5: G
Small ribosomal subunit protein eS6: H
Small ribosomal subunit protein uS7: I
Small ribosomal subunit protein uS8: J
Small ribosomal subunit protein eS8: K
Small ribosomal subunit protein uS9: L
Small ribosomal subunit protein uS10: M
Small ribosomal subunit protein uS11: N
Small ribosomal subunit protein uS12: O
Small ribosomal subunit protein uS13: P
Small ribosomal subunit protein uS15: Q
Small ribosomal subunit protein uS17: R
Small ribosomal subunit protein eS17: S
Small ribosomal subunit protein uS19: T
Small ribosomal subunit protein eS19: U
Small ribosomal subunit protein eS24: V
Small ribosomal subunit protein eS27: W
Small ribosomal subunit protein eS28: X
Small ribosomal subunit protein eS31: Y
Small ribosomal subunit protein uS3: Z
Large ribosomal subunit protein eL8: 0
Small ribosomal subunit protein eS25: 1
VapB-type antitoxin: 2
LSU ribosomal protein S30E (Rps30E): 3
aS34: 7
Small ribosomal subunit protein uS14: 8 - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:B
AC
BD
CE
DF
EG
FH
GI
HJ
IK
JL
KM
LN
MO
NP
OQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
31
c2
d3
e7
a8
P