SMTL ID : 9fw2.1

SARS CoV-2 nsp10 in complex with the ExoN domain from nsp14

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.117, C.120, C.128, C.130 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.117, A:C.120, A:C.128, A:C.130 ZN.2: 4 residues within 4Å: Chain A: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.74, A:C.77, A:H.83, A:C.90 ZN.4: 4 residues within 4Å: Chain B: H.258, C.262, H.265, C.280 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.258, B:C.262, B:H.265, B:C.280 ZN.5: 4 residues within 4Å: Chain B: C.208, C.211, C.227, H.230 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.208, B:C.211, B:C.227, B:H.230

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: V.119, C.130, D.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.131 Water bridges: A:D.131 GOL.6: 5 residues within 4Å: Chain B: K.62, M.63, F.74, H.189, Q.247 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:M.63, B:H.189, B:Q.247

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain B: A.139, M.154 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.139 Water bridges: B:R.136, B:R.136, B:M.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fisher, S.Z., SARS CoV-2 nsp10 in complex with the ExoN domain from nsp14. To Be Published

Release Date

2024-07-10

Peptides

Non-structural protein 11: A
Guanine-N7 methyltransferase nsp14: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-structural protein 11

Guanine-N7 methyltransferase nsp14

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