SMTL ID : 9fwg.1

LSD1/CoREST bound to bomedemstat

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: Bomedemstat FAD adduct

01.1: 38 residues within 4Å: Chain A: I.284, G.285, G.287, V.288, S.289, L.307, E.308, A.309, R.310, G.314, G.315, R.316, V.317, L.329, G.330, A.331, M.332, V.333, T.335, T.588, A.589, V.590, T.624, L.625, P.626, V.637, L.659, K.661, W.751, W.756, S.760, Y.761, G.800, E.801, A.809, T.810, V.811, A.814 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:T.335, A:Y.761, A:Y.761, A:T.810 Hydrogen bonds: A:S.286, A:V.288, A:S.289, A:S.289, A:S.289, A:A.309, A:R.310, A:R.310, A:R.316, A:M.332, A:V.333, A:V.333, A:V.590, A:V.590, A:K.661, A:K.661, A:W.756, A:E.801, A:V.811 Salt bridges: A:R.316, A:R.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jasmine, S. et al., Characterization of structural, biochemical, pharmacokinetic, and pharmacodynamic properties of the LSD1 inhibitor bomedemstat in preclinical models. Prostate (2024)

Release Date

2024-07-10

Peptides

Lysine-specific histone demethylase 1A: A
REST corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lysine-specific histone demethylase 1A

REST corepressor 1

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