SMTL ID : 9fwo.1

Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00216

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.74, C.77, H.83, C.90 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.74, A:C.77, A:H.83, A:C.90 ZN.2: 4 residues within 4Å: Chain A: C.117, C.120, C.128, C.130 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.117, A:C.120, A:C.128, A:C.130 ZN.3: 4 residues within 4Å: Chain B: C.208, C.211, C.227, H.230 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.208, B:C.211, B:C.227, B:H.230 ZN.4: 4 residues within 4Å: Chain B: H.258, C.262, H.265, C.280 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.258, B:C.262, B:H.265, B:C.280

1 x 01: 1-methylpyrrole-2-carboxamide

01.5: 9 residues within 4Å: Chain A: N.3, A.4 Chain B: D.11, V.15, I.16, T.17, G.18, L.28, S.29 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:N.3, B:D.11 Hydrogen bonds: B:I.16 Water bridges: B:R.54

1 x MG: MAGNESIUM ION(Non-covalent)

MG.6: 1 residues within 4Å: Chain B: D.91 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krojer, T. et al., Crystal Structure of SARS-CoV-2 NSP10-NSP14 (ExoN) in complex with VT00216. To Be Published

Release Date

2025-07-09

Peptides

Non-structural protein 10: A
Guanine-N7 methyltransferase nsp14: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-structural protein 10

Guanine-N7 methyltransferase nsp14

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