SMTL ID : 9fww.1

Human NKp30 in complex with a VHH variant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 2 residues within 4Å: Chain A: W.2, N.24 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.24

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.50, G.57, L.59, A.60, P.61 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.50, A:L.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fernandez-Quintero, M.L. et al., On the humanization of VHHs: Prospective case studies, experimental and computational characterization of structural determinants for functionality. Protein Sci. (2024)

Release Date

2024-10-30

Peptides

Natural cytotoxicity triggering receptor 3: A
VHH: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Natural cytotoxicity triggering receptor 3

VHH