SMTL ID : 9fx1.1

CryoEM structure of RV-A89

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x DAO: LAURIC ACID(Non-covalent)

DAO.1: 18 residues within 4Å: Chain A: I.77, W.101, V.103, S.104, L.105, Q.106, F.123, S.125, I.127, Y.149, F.184, I.186, Y.195, M.197, M.219, I.222, I.241, H.243 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.103, A:L.105, A:L.105, A:I.127, A:I.127, A:Y.149, A:I.186, A:I.222, A:I.222 Hydrogen bonds: A:L.105, A:Q.106 Salt bridges: A:H.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wald, J. et al., DMSO might impact ligand binding, capsid stability, and RNA interaction in viral preparations. Sci Rep (2024)

Release Date

2024-12-18

Peptides

Capsid protein VP1: A
Capsid protein VP2: B
Capsid protein VP3: C
Capsid protein VP4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Capsid protein VP1

Capsid protein VP2

Capsid protein VP3

Capsid protein VP4