SMTL ID : 9fx2.1

Structure of methylamine activated CD109

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: G.21, N.23 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.23 NAG.2: 2 residues within 4Å: Chain A: S.99, N.100 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.100 NAG.3: 4 residues within 4Å: Chain A: T.861, P.1194, A.1224, N.1226 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.1224 NAG.4: 4 residues within 4Å: Chain A: N.347, E.413, F.414, P.415 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.413, A:E.413 NAG.5: 4 residues within 4Å: Chain A: N.370, V.372, K.399, N.401 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.372 Hydrogen bonds: A:N.370, A:K.399

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Almeida, A.V. et al., Structure of methylamine activated CD109. To Be Published

Release Date

2025-03-19

Peptides

CD109 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD109 antigen

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