SMTL ID : 9fx3.1

Structure of active human CD109

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: H.227, N.229, S.275 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 11 residues within 4Å: Chain A: S.1066, N.1068, R.1096, A.1097, E.1098, F.1105, W.1106, V.1107, S.1108, S.1109, E.1110 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.1098 NAG-NAG.3: 4 residues within 4Å: Chain A: T.249, L.251, N.261, T.263 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain A: T.1192, G.1193, P.1194, N.1226 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: G.21, N.23 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain A: N.100, T.624 No protein-ligand interaction detected (PLIP) NAG.7: 1 residues within 4Å: Chain A: N.273 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain A: L.306, N.319 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain A: N.347, E.413 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain A: K.399, N.401 No protein-ligand interaction detected (PLIP) NAG.11: 2 residues within 4Å: Chain A: E.477, N.495 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.495

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Almeida, A.V. et al., Structure of active human CD109. To Be Published

Release Date

2025-03-19

Peptides

CD109 antigen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CD109 antigen

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