SMTL ID : 9fxz.1 (1 other biounit)

Galectin-8 N-terminal carbohydrate recognition domain in complex with 4-(bromophenyl)phthalazinone D-galactal ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x V19: 4-(4-bromophenyl)-2-[[(2~{R},3~{R},4~{R})-2-(hydroxymethyl)-3-oxidanyl-3,4-dihydro-2~{H}-pyran-4-yl]oxymethyl]phthalazin-1-one(Non-covalent)

V19.1: 14 residues within 4Å: Chain A: R.45, Q.47, D.49, M.56, R.59, H.65, N.67, R.69, V.77, N.79, W.86, E.89, Y.141, G.142 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:H.65, A:R.69, A:N.79 Water bridges: A:R.59, A:R.59, A:R.69 pi-Stacking: A:Y.141 pi-Cation interactions: A:R.59

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: L.110, K.111, D.112, K.113 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Klaveren, S. et al., Galectin-8N-Selective 4-Halophenylphthalazinone-Galactals Double pi-Stack in a Unique Pocket. Acs Med.Chem.Lett. (2024)

Release Date

2025-07-16

Peptides

Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-8

Related Entries With Identical Sequence