SMTL ID : 9fyp.1

Cryo EM structure of the type 3B polymorph of alpha-synuclein at low pH.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: G.51, V.52, A.53 Chain C: H.50, G.51 Ligand excluded by PLIP CL.2: 5 residues within 4Å: Chain B: G.51, V.52, A.53 Chain D: H.50, G.51 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain C: H.50, G.51, V.52, A.53 Chain E: H.50, G.51 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain D: G.51, V.52, A.53 Chain F: H.50, G.51 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain E: G.51, V.52, A.53 Chain G: H.50, G.51 Ligand excluded by PLIP CL.6: 6 residues within 4Å: Chain F: H.50, G.51, V.52, A.53 Chain H: H.50, G.51 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain G: G.51, V.52 Chain I: H.50, G.51 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain H: G.51, V.52, A.53 Chain J: H.50, G.51 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain I: G.51, V.52, A.53 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain J: G.51, V.52 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frey, L. et al., On the pH-dependence of alpha-synuclein amyloid polymorphism and the role of secondary nucleation in seed-based amyloid propagation. Elife (2024)

Release Date

2024-07-17

Peptides

Alpha-synuclein: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

C
K

D
L

E
M

F
N

G
O

H
P

I
Q

J
R

Alpha-synuclein

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