SMTL ID : 9fyv.1

Crystal structure of the engineered photoenzyme VEnT1.3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 6 residues within 4Å: Chain A: R.180, H.181, M.182, N.183, Y.188, K.255 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.183 Water bridges: A:D.184 PEG.4: 7 residues within 4Å: Chain A: T.11, V.13, L.53, K.276, T.281, F.283, K.294 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.294 PEG.5: 9 residues within 4Å: Chain A: M.21, Y.121, X.173, Q.195, G.226, A.229, R.244, S.271, H.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.121, A:Q.195, A:Q.195

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: Y.126, D.184, G.185, T.308, L.309 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.308 EDO.3: 3 residues within 4Å: Chain A: S.111, E.112, G.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Crawshaw, R. et al., Efficient and selective energy transfer photoenzymes powered by visible light. Nat.Chem. (2025)

Release Date

2025-05-14

Peptides

VEnT1.3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VEnT1.3