SMTL ID : 9fz1.2 (1 other biounit)

UMG-SP3 amidase from uncultured bacterium in complex with 4,4'-MDA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x 01: 4-[(4-aminophenyl)methyl]aniline

01.1: 7 residues within 4Å: Chain A: V.123, S.131, N.132, P.133, G.136, R.137, D.363 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.133 Hydrogen bonds: A:R.137 Water bridges: A:D.363 01.5: 15 residues within 4Å: Chain A: L.125, A.126, D.127, W.128, G.150, S.151, I.172, G.173, S.175, L.304, L.308, A.365, D.366, W.367, L.385 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.304, A:W.367 Hydrogen bonds: A:D.127, A:D.127, A:S.151 Water bridges: A:G.173 pi-Stacking: A:W.367, A:W.367

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: S.196, L.197, E.198, A.208, R.209, R.234 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.209 Hydrogen bonds: A:S.196, A:L.197 Salt bridges: A:R.234 ACT.3: 3 residues within 4Å: Chain A: L.21, R.50, K.54 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.50, A:K.54 ACT.4: 8 residues within 4Å: Chain A: D.45, R.48, A.49, A.52, I.81, K.109, V.114, F.115 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.48 Hydrogen bonds: A:F.115 Water bridges: A:R.48, A:D.101, A:K.109 Salt bridges: A:K.109 ACT.6: 6 residues within 4Å: Chain A: P.222, Q.223, A.226, V.427, R.428, A.431 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.223 Water bridges: A:R.428 Salt bridges: A:R.428

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rotilio, L. et al., Structural and Functional Characterization of an Amidase Targeting a Polyurethane for Sustainable Recycling. Angew.Chem.Int.Ed.Engl. (2025)

Release Date

2025-02-05

Peptides

UMG-SP3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

UMG-SP3

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