SMTL ID : 9fzb.1

Human p53 DNA-binding domain bound to DARPin C10-H82R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.44 Å

Oligo State

hetero-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: F.21, L.22, S.24, C.32, Y.34, P.50 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.22, A:S.24, A:S.24, A:Y.34, A:P.50 EDO.2: 3 residues within 4Å: Chain A: H.87, C.90, D.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.92 EDO.4: 6 residues within 4Å: Chain A: D.56 Chain B: W.69, K.71, D.100, F.102, L.109 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.84, H.87, C.146, C.150 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.84, A:H.87, A:C.146, A:C.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Munick, P. et al., DARPin-induced reactivation of p53 in HPV-positive cells. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-04-02

Peptides

Cellular tumor antigen p53: A
DARPin C10-H82R: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Cellular tumor antigen p53

DARPin C10-H82R

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