SMTL ID : 9g0d.1

Structure of human Mical1 bMERB_V978A domain:Rab10 complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 25 residues within 4Å: Chain B: D.19, S.20, G.21, V.22, G.23, K.24, T.25, C.26, F.36, N.37, T.38, F.40, S.42, T.43, T.67, A.68, G.69, N.124, K.125, D.127, M.128, S.154, A.155, K.156 Ligands: MG.2 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:S.20, B:G.21, B:V.22, B:G.23, B:K.24, B:K.24, B:K.24, B:T.25, B:C.26, B:N.37, B:T.43, B:T.67, B:G.69, B:N.124, B:K.125, B:K.125, B:A.155, B:K.156 Water bridges: B:T.43, B:T.43, B:Q.70, B:Q.70 Salt bridges: B:D.127 pi-Stacking: B:F.36, B:F.36

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain B: T.25, T.43 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:T.25, B:T.43, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rai, A. et al., Biochemical and structural insights into the auto-inhibited state of Mical1 and its activation by Rab8. Elife (2024)

Release Date

2025-07-02

Peptides

[F-actin]-monooxygenase MICAL1: A
Ras-related protein Rab-10: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

[F-actin]-monooxygenase MICAL1

Ras-related protein Rab-10

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