- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG-NAG.2: 3 residues within 4Å:- Chain A: P.132, N.134, H.173
No protein-ligand interaction detected (PLIP)NAG-NAG.4: 3 residues within 4Å:- Chain B: P.132, N.134, H.173
No protein-ligand interaction detected (PLIP)NAG-NAG.6: 3 residues within 4Å:- Chain C: P.132, N.134, H.173
No protein-ligand interaction detected (PLIP)NAG-NAG.8: 3 residues within 4Å:- Chain D: P.132, N.134, H.173
No protein-ligand interaction detected (PLIP)NAG-NAG.10: 3 residues within 4Å:- Chain E: P.132, N.134, H.173
No protein-ligand interaction detected (PLIP)- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.11: 4 residues within 4Å:- Chain A: N.62, S.64, F.65, E.68
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.62, A:E.68
NAG.17: 4 residues within 4Å:- Chain B: N.62, S.64, F.65, E.68
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.62, B:E.68
NAG.21: 4 residues within 4Å:- Chain C: N.62, S.64, F.65, E.68
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:N.62, C:E.68
NAG.26: 4 residues within 4Å:- Chain D: N.62, S.64, F.65, E.68
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.62, D:E.68
NAG.30: 4 residues within 4Å:- Chain E: N.62, S.64, F.65, E.68
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.62, E:E.68
- 10 x D10: DECANE(Non-covalent)
D10.12: 6 residues within 4Å:- Chain A: I.288, W.291, V.292, W.295
- Chain E: F.355, Y.358
9 PLIP interactions:5 interactions with chain A, 4 interactions with chain E- Hydrophobic interactions: A:I.288, A:W.291, A:V.292, A:W.295, A:W.295, E:F.355, E:F.355, E:Y.358, E:Y.358
D10.13: 3 residues within 4Å:- Chain A: I.284, N.386, W.390
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.284, A:W.390, A:W.390
D10.15: 6 residues within 4Å:- Chain A: F.355, Y.358
- Chain B: I.288, W.291, V.292, W.295
9 PLIP interactions:5 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:I.288, B:W.291, B:V.292, B:W.295, B:W.295, A:F.355, A:F.355, A:Y.358, A:Y.358
D10.16: 3 residues within 4Å:- Chain B: I.284, N.386, W.390
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.284, B:W.390, B:W.390
D10.19: 6 residues within 4Å:- Chain B: F.355, Y.358
- Chain C: I.288, W.291, V.292, W.295
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain C- Hydrophobic interactions: B:F.355, B:F.355, B:Y.358, B:Y.358, C:I.288, C:W.291, C:V.292, C:W.295, C:W.295
D10.20: 3 residues within 4Å:- Chain C: I.284, N.386, W.390
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:I.284, C:W.390, C:W.390
D10.23: 7 residues within 4Å:- Chain C: L.351, F.355, Y.358
- Chain D: I.288, W.291, V.292, W.295
10 PLIP interactions:5 interactions with chain C, 5 interactions with chain D- Hydrophobic interactions: C:L.351, C:F.355, C:F.355, C:Y.358, C:Y.358, D:I.288, D:W.291, D:V.292, D:W.295, D:W.295
D10.24: 3 residues within 4Å:- Chain D: I.284, N.386, W.390
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.284, D:W.390, D:W.390
D10.27: 6 residues within 4Å:- Chain D: F.355, Y.358
- Chain E: I.288, W.291, V.292, W.295
9 PLIP interactions:4 interactions with chain D, 5 interactions with chain E- Hydrophobic interactions: D:F.355, D:F.355, D:Y.358, D:Y.358, E:I.288, E:W.291, E:V.292, E:W.295, E:W.295
D10.28: 3 residues within 4Å:- Chain E: I.284, N.386, W.390
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:I.284, E:W.390, E:W.390
- 5 x CL: CHLORIDE ION(Non-functional Binders)
CL.14: 5 residues within 4Å:- Chain A: K.157, S.158
- Chain B: F.159, H.161, G.162
Ligand excluded by PLIPCL.18: 5 residues within 4Å:- Chain B: K.157, S.158
- Chain C: F.159, H.161, G.162
Ligand excluded by PLIPCL.22: 5 residues within 4Å:- Chain C: K.157, S.158
- Chain D: F.159, H.161, G.162
Ligand excluded by PLIPCL.25: 5 residues within 4Å:- Chain D: K.157, S.158
- Chain E: F.159, H.161, G.162
Ligand excluded by PLIPCL.29: 5 residues within 4Å:- Chain A: F.159, H.161, G.162
- Chain E: K.157, S.158
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mihaylov, D.B. et al., Cryo-EM structure of the beta3 homomeric GABA(A) receptor in the long-lived desensitised state (C5) sprayed with PBS. To Be Published
- Release Date
- 2025-07-23
- Peptides
- Gamma-aminobutyric acid receptor subunit beta-3: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-pentamer
- Ligands
- 5 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 5 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 10 x D10: DECANE(Non-covalent)
- 5 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mihaylov, D.B. et al., Cryo-EM structure of the beta3 homomeric GABA(A) receptor in the long-lived desensitised state (C5) sprayed with PBS. To Be Published
- Release Date
- 2025-07-23
- Peptides
- Gamma-aminobutyric acid receptor subunit beta-3: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E - Membrane
-
We predict this structure to be a membrane protein.