SMTL ID : 9g6x.1

Cryo-EM structure of TTYH2 in complex with sybody 1 in GDN

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: D.127, N.130, S.134, T.200, S.203, D.204 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain A: L.346, Q.349, L.350, N.353 Chain B: Q.311 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:Q.311 NAG-NAG.3: 6 residues within 4Å: Chain B: D.127, N.130, S.134, T.196, T.200, S.203 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: L.346, Q.349, L.350, N.353 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 1 residues within 4Å: Chain A: N.32 No protein-ligand interaction detected (PLIP) NAG.6: 2 residues within 4Å: Chain A: S.36, N.284 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain B: N.32, S.33, T.34 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:T.34 NAG.8: 2 residues within 4Å: Chain B: S.36, N.284 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sukalskaia, A. et al., Interactions between TTYH2 and APOE facilitate endosomal lipid transfer. Nature (2025)

Release Date

2025-05-21

Peptides

Protein tweety homolog 2: AB
sybody 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Protein tweety homolog 2

sybody 1

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