SMTL ID : 9g73.1

Crystal structure of mouse Carboxylesterase 2e (Ces2e)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 4 residues within 4Å: Chain A: R.272, N.276, G.279, A.281 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.272

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG-FUC.2: 4 residues within 4Å: Chain B: R.272, N.276, G.279, C.280 No protein-ligand interaction detected (PLIP)

15 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.29, P.32, I.33, R.34, H.56 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.29 Water bridges: A:R.34 Salt bridges: A:R.34, A:H.56 SO4.4: 5 residues within 4Å: Chain A: A.529, K.531, A.532, R.533, R.534 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.529, A:K.531, A:A.532, A:R.533 Salt bridges: A:R.533 SO4.5: 4 residues within 4Å: Chain A: D.396, T.397, E.398, D.399 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.398, A:D.399 SO4.6: 4 residues within 4Å: Chain A: H.133, A.134, H.135, S.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.133 Salt bridges: A:H.133, A:H.135 SO4.7: 6 residues within 4Å: Chain A: T.89, S.90, H.91, P.115, P.116, I.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.90, A:H.91 Salt bridges: A:H.91 SO4.8: 3 residues within 4Å: Chain A: R.221, R.496, H.497 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.221, A:R.221 Salt bridges: A:R.221, A:H.497 SO4.9: 4 residues within 4Å: Chain A: N.343, E.437, Q.439, K.454 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.343 Salt bridges: A:K.454 SO4.12: 6 residues within 4Å: Chain B: S.29, P.32, I.33, R.34, H.56, H.135 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.34, B:R.34 Salt bridges: B:R.34, B:H.135 SO4.13: 4 residues within 4Å: Chain B: K.531, A.532, R.533, R.534 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.531, B:K.531, B:A.532, B:R.533 Salt bridges: B:R.533 SO4.14: 2 residues within 4Å: Chain B: R.428, H.513 5 PLIP interactions: 5 interactions with chain B Water bridges: B:H.425, B:R.428, B:R.428, B:R.428 Salt bridges: B:R.428 SO4.15: 4 residues within 4Å: Chain B: H.133, A.134, H.135, S.138 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:H.133 SO4.16: 4 residues within 4Å: Chain A: K.330 Chain B: R.221, R.496, H.497 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.496 Water bridges: B:R.221 Salt bridges: B:R.221, B:H.497, A:K.330 SO4.17: 4 residues within 4Å: Chain B: D.396, T.397, E.398, D.399 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.398, B:D.399 SO4.18: 4 residues within 4Å: Chain B: S.90, H.91, P.115, P.116 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.90, B:H.91 Salt bridges: B:H.91 SO4.19: 4 residues within 4Å: Chain B: N.343, E.437, Q.439, K.454 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.343, B:Q.439 Salt bridges: B:K.454

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 5 residues within 4Å: Chain A: G.148, G.149, A.150, S.228, A.229 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain A: K.65, P.66, P.79, E.80 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain B: A.64, K.65, P.66, P.79, E.80 Ligand excluded by PLIP CL.21: 5 residues within 4Å: Chain B: G.148, G.149, A.150, S.228, A.229 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eisner, H. et al., Crystal structure of mouse Ces2e. To Be Published

Release Date

2025-08-13

Peptides

Pyrethroid hydrolase Ces2e: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pyrethroid hydrolase Ces2e