SMTL ID : 9g8s.1

C3 reconstruction of extended phiCD508 needle

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-12-6-6-6-6-6-3-3-3-mer

Ligands

1 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain g: H.73, H.75 Chain h: H.73, H.75 Chain j: H.73, H.75 2 PLIP interactions: 1 interactions with chain j, 1 interactions with chain g Metal complexes: j:H.73, g:H.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, J.S. et al., Molecular mechanism of bacteriophage contraction structure of an S-layer-penetrating bacteriophage. Life Sci Alliance (2025)

Release Date

2025-04-09

Peptides

Baseplate J family protein: AGHNOUV1289f
XkdT-related protein: BIPW3a
Peptidoglycan-binding LysM protein: CJQX4b
XkdM-related protein: DKRY5c
Tail sheath: ELSZ6d
XkdS-related protein: FMT07e
Phage protein: ghj
XkdQ-related protein: ikl
Tail tape measure: mno

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

G
G

H
A

N
H

O
B

U
I

V
D

1
J

2
E

8
K

9
F

f
L

B
N

I
M

P
O

W
P

3
Q

a
R

C
T

J
S

Q
U

X
V

4
W

b
X

D
Z

K
Y

R
a

Y
b

5
c

c
d

E
g

L
e

S
f

Z
h

6
i

d
j

F
m

M
k

T
l

0
n

7
o

e
p

g
r

h
v

j
s

i
q

k
t

l
u

m
w

n
x

o
y

Baseplate J family protein

XkdT-related protein

Peptidoglycan-binding LysM protein

XkdM-related protein

Tail sheath

XkdS-related protein

Phage protein

XkdQ-related protein

Tail tape measure

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