- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-28-mer
- Ligands
- 14 x 01: 2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid
01.1: 12 residues within 4Å:- Chain A: C.6
- Chain C: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:A.169, C:R.209, C:R.209
- Hydrogen bonds: C:R.379
- pi-Cation interactions: C:R.209
01.2: 12 residues within 4Å:- Chain E: C.6
- Chain G: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain G- Hydrophobic interactions: G:A.169, G:R.209, G:R.209
- Hydrogen bonds: G:R.379
- pi-Cation interactions: G:R.209
01.3: 12 residues within 4Å:- Chain I: C.6
- Chain K: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain K- Hydrophobic interactions: K:A.169, K:R.209, K:R.209
- Hydrogen bonds: K:R.379
- pi-Cation interactions: K:R.209
01.4: 12 residues within 4Å:- Chain M: C.6
- Chain O: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain O- Hydrophobic interactions: O:A.169, O:R.209, O:R.209
- Hydrogen bonds: O:R.379
- pi-Cation interactions: O:R.209
01.5: 12 residues within 4Å:- Chain Q: C.6
- Chain S: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain S- Hydrophobic interactions: S:A.169, S:R.209, S:R.209
- Hydrogen bonds: S:R.379
- pi-Cation interactions: S:R.209
01.6: 12 residues within 4Å:- Chain U: C.6
- Chain W: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain W- Hydrophobic interactions: W:A.169, W:R.209, W:R.209
- Hydrogen bonds: W:R.379
- pi-Cation interactions: W:R.209
01.7: 12 residues within 4Å:- Chain 0: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
- Chain Y: C.6
5 PLIP interactions:5 interactions with chain 0- Hydrophobic interactions: 0:A.169, 0:R.209, 0:R.209
- Hydrogen bonds: 0:R.379
- pi-Cation interactions: 0:R.209
01.8: 12 residues within 4Å:- Chain 2: C.6
- Chain 4: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain 4- Hydrophobic interactions: 4:A.169, 4:R.209, 4:R.209
- Hydrogen bonds: 4:R.379
- pi-Cation interactions: 4:R.209
01.9: 12 residues within 4Å:- Chain 6: C.6
- Chain 8: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain 8- Hydrophobic interactions: 8:A.169, 8:R.209, 8:R.209
- Hydrogen bonds: 8:R.379
- pi-Cation interactions: 8:R.209
01.10: 12 residues within 4Å:- Chain a: C.6
- Chain c: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain c- Hydrophobic interactions: c:A.169, c:R.209, c:R.209
- Hydrogen bonds: c:R.379
- pi-Cation interactions: c:R.209
01.11: 12 residues within 4Å:- Chain e: C.6
- Chain g: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain g- Hydrophobic interactions: g:A.169, g:R.209, g:R.209
- Hydrogen bonds: g:R.379
- pi-Cation interactions: g:R.209
01.12: 12 residues within 4Å:- Chain i: C.6
- Chain k: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain k- Hydrophobic interactions: k:A.169, k:R.209, k:R.209
- Hydrogen bonds: k:R.379
- pi-Cation interactions: k:R.209
01.13: 12 residues within 4Å:- Chain m: C.6
- Chain o: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain o- Hydrophobic interactions: o:A.169, o:R.209, o:R.209
- Hydrogen bonds: o:R.379
- pi-Cation interactions: o:R.209
01.14: 12 residues within 4Å:- Chain q: C.6
- Chain s: R.162, A.166, A.169, A.170, K.172, I.205, A.206, R.209, M.210, I.213, R.379
5 PLIP interactions:5 interactions with chain s- Hydrophobic interactions: s:A.169, s:R.209, s:R.209
- Hydrogen bonds: s:R.379
- pi-Cation interactions: s:R.209
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chenavier, F. et al., Influenza a virus antiparallel helical nucleocapsid-like pseudo-atomic structure. Nucleic Acids Res. (2025)
- Release Date
- 2025-01-15
- Peptides
- Nucleoprotein: CDGHKLOPSTWX014589cdghklopst
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AD
BG
AH
BK
AL
BO
AP
BS
AT
BW
AX
B0
A1
B4
A5
B8
A9
Bc
Ad
Bg
Ah
Bk
Al
Bo
Ap
Bs
At
B
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-28-mer
- Ligands
- 14 x 01: 2-[3,6-bis(oxidanylidene)-4,5-dihydroxanthen-9-yl]-4-[3-[(2R)-2-oxidanylpropoxy]propylcarbamoyl]benzoic acid
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chenavier, F. et al., Influenza a virus antiparallel helical nucleocapsid-like pseudo-atomic structure. Nucleic Acids Res. (2025)
- Release Date
- 2025-01-15
- Peptides
- Nucleoprotein: CDGHKLOPSTWX014589cdghklopst
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:C
AD
BG
AH
BK
AL
BO
AP
BS
AT
BW
AX
B0
A1
B4
A5
B8
A9
Bc
Ad
Bg
Ah
Bk
Al
Bo
Ap
Bs
At
B