SMTL ID : 9gax.1

TEAD1 in complex with a reversible inhibitor N-[(1S)-2-hydroxy-1-(1-methyl-1H-pyrazol-3-yl)ethyl]-2-methyl-8-[4-(trifluoromethyl)phenyl]-2H,8H-pyrazolo[3,4-b]indole-5-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.20, Q.22, Y.28, F.99 No protein-ligand interaction detected (PLIP) GOL.6: 3 residues within 4Å: Chain B: E.20, Q.22, G.97 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.20, B:Q.22, B:G.97

2 x 01: 2-methyl-~{N}-[(1~{S})-1-(1-methylpyrazol-3-yl)-2-oxidanyl-ethyl]-4-[4-(trifluoromethyl)phenyl]pyrazolo[3,4-b]indole-7-carboxamide

01.2: 23 residues within 4Å: Chain A: F.15, A.17, F.33, V.34, F.84, A.86, L.88, V.102, V.128, E.129, K.130, S.150, P.151, M.152, C.153, M.156, F.159, I.160, L.163, F.179, I.181, C.199, F.201 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.15, A:A.17, A:F.33, A:V.34, A:V.102, A:K.130, A:M.156, A:I.160, A:F.179, A:I.181, A:F.201 Hydrogen bonds: A:P.151, A:C.153 Water bridges: A:S.150, A:S.150 01.7: 22 residues within 4Å: Chain B: F.15, A.17, F.33, V.34, F.84, A.86, L.88, V.102, V.128, E.129, K.130, S.150, P.151, M.152, C.153, M.156, I.160, L.163, L.176, I.181, C.199, F.201 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:F.15, B:A.17, B:F.33, B:V.102, B:K.130, B:M.156, B:I.160, B:I.181, B:F.201 Hydrogen bonds: B:P.151, B:C.153 Water bridges: B:S.150

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: Y.43, S.44, D.45 Chain B: R.216 Ligands: SO4.9 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.216 Hydrogen bonds: A:S.44, A:D.45 SO4.4: 4 residues within 4Å: Chain A: N.40, H.41, S.42, H.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.42 Water bridges: A:H.41, A:H.41, A:E.49 Salt bridges: A:H.213 SO4.5: 3 residues within 4Å: Chain A: G.74, P.75, Q.76 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.76 SO4.8: 6 residues within 4Å: Chain A: R.3, S.4 Chain B: P.2, R.3, S.4, Y.43 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:R.3, B:S.4, A:S.4, A:S.4 Salt bridges: B:R.3, A:R.3 Water bridges: A:R.3, A:R.3, A:R.3, A:R.11 SO4.9: 6 residues within 4Å: Chain A: D.45 Chain B: P.46, L.47, L.48, R.216 Ligands: SO4.3 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.46, B:L.48, A:D.45 Water bridges: B:R.216 Salt bridges: B:R.216 SO4.10: 4 residues within 4Å: Chain A: T.8 Chain B: S.42, Y.43, S.44 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.42, B:Y.43, B:S.44, A:T.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heinrich, T. et al., MoA Studies of the TEAD P-Site Binding Ligand MSC-4106 and Its Optimization to TEAD1-Selective Amide M3686. J.Med.Chem. (2024)

Release Date

2025-01-22

Peptides

Transcriptional enhancer factor TEF-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Transcriptional enhancer factor TEF-1

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