SMTL ID : 9gb9.2 (3 other biounits)

Crystal structure of Lotus japonicus CERK6 kinase domain D460N

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: S.98, L.101, R.102, S.143, E.209, A.213, K.214, D.215 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.143, A:E.209, A:D.215 EDO.2: 4 residues within 4Å: Chain A: L.71, D.149, R.153, K.155 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.155 Water bridges: A:R.153 EDO.3: 1 residues within 4Å: Chain A: L.281 No protein-ligand interaction detected (PLIP) EDO.4: 3 residues within 4Å: Chain A: Q.280, L.281, R.282 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.281 Water bridges: A:K.197, A:K.197, A:S.284 EDO.5: 3 residues within 4Å: Chain A: S.10, Y.11, E.82 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.11 Water bridges: A:D.12 EDO.7: 4 residues within 4Å: Chain A: P.108, P.110, T.113, Y.152 1 PLIP interactions: 1 interactions with chain A Water bridges: A:T.113

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.6: 6 residues within 4Å: Chain A: A.46, K.48, E.90, F.91, I.92, L.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.48, A:E.90, A:I.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsitsikli, M. et al., Two residues reprogram immunity receptor kinases to signal in nitrogen-fixing symbiosis. Biorxiv (2024)

Release Date

2024-11-27

Peptides

LysM type receptor kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

LysM type receptor kinase

Related Entries With Identical Sequence