SMTL ID : 9gcu.1

Rho-P167L-ATP gamma S

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: R.366 Chain B: T.185, R.212 Ligands: ADP.2 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.185, H2O.1 MG.3: 4 residues within 4Å: Chain C: T.185, R.212, E.215 Ligands: ADP.4 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:T.185, H2O.1, H2O.2 MG.5: 2 residues within 4Å: Chain D: T.185 Ligands: ADP.6 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:T.185, H2O.2, H2O.2, H2O.3, H2O.3 MG.7: 4 residues within 4Å: Chain E: T.185, R.212, E.215 Ligands: ADP.8 4 PLIP interactions: 2 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:T.185, E:E.215, H2O.3, H2O.3 MG.9: 3 residues within 4Å: Chain F: T.185, R.212 Ligands: ADP.10 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:T.185

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: R.366, E.369 Chain B: T.158, P.180, K.181, A.182, G.183, K.184, T.185, M.186, F.355 Ligands: MG.1 13 PLIP interactions: 10 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.158, B:P.180, B:A.182, B:G.183, B:K.184, B:T.185, B:T.185, B:M.186, A:R.366 Salt bridges: B:K.184, A:R.366, A:R.366 pi-Stacking: B:F.355 ADP.4: 12 residues within 4Å: Chain B: R.366 Chain C: D.156, T.158, K.181, A.182, G.183, K.184, T.185, M.186, R.353, F.355 Ligands: MG.3 15 PLIP interactions: 12 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:D.156, C:K.181, C:A.182, C:G.183, C:K.184, C:T.185, C:M.186, C:R.353, C:R.353 Water bridges: C:T.185, B:R.366 Salt bridges: C:K.184, B:R.366, B:R.366 pi-Stacking: C:F.355 ADP.6: 13 residues within 4Å: Chain C: R.366, E.369 Chain D: E.155, T.158, K.181, A.182, G.183, K.184, T.185, M.186, R.353, F.355 Ligands: MG.5 23 PLIP interactions: 5 interactions with chain C, 18 interactions with chain D Hydrogen bonds: C:R.366, D:E.155, D:T.158, D:K.181, D:A.182, D:G.183, D:K.184, D:T.185, D:M.186, D:R.353 Water bridges: C:R.366, C:K.367, D:K.184, D:R.212, D:R.212, D:R.212, D:R.212, D:R.212 Salt bridges: C:R.366, C:K.367, D:K.184 pi-Stacking: D:F.355, D:F.355 ADP.8: 13 residues within 4Å: Chain D: R.366, E.369 Chain E: E.155, T.158, K.181, A.182, G.183, K.184, T.185, M.186, R.353, F.355 Ligands: MG.7 21 PLIP interactions: 19 interactions with chain E, 2 interactions with chain D Hydrogen bonds: E:T.158, E:T.158, E:K.181, E:A.182, E:G.183, E:K.184, E:T.185, E:T.185, E:T.185, E:M.186, E:R.353, E:R.353, D:R.366, D:E.369 Water bridges: E:K.184, E:K.184, E:T.185, E:E.215 Salt bridges: E:K.184 pi-Stacking: E:F.355, E:F.355 ADP.10: 10 residues within 4Å: Chain E: R.366, E.369 Chain F: K.181, A.182, G.183, K.184, T.185, M.186, F.355 Ligands: MG.9 8 PLIP interactions: 6 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:K.181, F:A.182, F:G.183, F:K.184, F:T.185, E:R.366, E:E.369 pi-Stacking: F:F.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gjorgjevikj, D. et al., Rho-P167L-ATP gamma S. To Be Published

Release Date

2024-10-09

Peptides

Transcription termination factor Rho: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Transcription termination factor Rho

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