SMTL ID : 9gdg.1

Crystal structure of TRIM24 PHD-BRD in complex with N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide (PEG linker unresolved)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

1 x 01: N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide

01.1: 13 residues within 4Å: Chain A: L.100, A.101, F.102, V.106, P.107, V.110, Y.113, C.154, F.157, N.158, E.163, V.164, A.167 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.100, A:V.110, A:A.167 Hydrogen bonds: A:N.158

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.19, K.21, C.22, C.45, F.47, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.45, A:C.48 ZN.3: 5 residues within 4Å: Chain A: C.7, V.9, C.10, H.27, C.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.27, A:C.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Platt, M.A. et al., Crystal structure of TRIM24 PHD-BRD in complex with N-(2-(2-(2-acetamidoethoxy)ethoxy)ethyl)-3-(N-(1,3-dimethyl-2-oxo-6-(3-propoxyphenoxy)-2,3-dihydro-1H-benzo[d]imidazol-5-yl)sulfamoyl)benzamide (PEG linker unresolved). To Be Published

Release Date

2025-08-13

Peptides

Transcription intermediary factor 1-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Transcription intermediary factor 1-alpha

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