SMTL ID : 9gek.1

Structure of the FAST1-FAST2-RAP module from human FASTKD4 by carrier-driven crystallisation with maltose binding protein from E. coli.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x P33: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL(Non-covalent)

P33.1: 13 residues within 4Å: Chain A: T.396, V.398, L.402, L.406, L.409, L.413, E.417, H.420, C.421, S.424, F.425, L.428, W.430 No protein-ligand interaction detected (PLIP)

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 3 residues within 4Å: Chain A: T.414, G.416, E.417 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.414, A:T.414, A:E.417 Water bridges: A:S.415

2 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.3: 4 residues within 4Å: Chain A: F.182, Y.236, W.256 Ligands: FRU.4 No protein-ligand interaction detected (PLIP) GLC.5: 7 residues within 4Å: Chain A: K.662, D.684, P.686, Y.688, E.689, K.706 Ligands: FRU.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.689

2 x FRU: beta-D-fructofuranose(Non-covalent)

FRU.4: 7 residues within 4Å: Chain A: E.137, E.179, Y.181, F.182, W.256, M.356 Ligands: GLC.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.137 FRU.6: 10 residues within 4Å: Chain A: W.652, F.657, K.662, D.663, L.664, R.672, D.684, P.686, Y.688 Ligands: GLC.5 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.652, A:D.663, A:D.663, A:L.664, A:R.672, A:R.672

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., The Vsr-like protein FASTKD4 regulates the stability and polyadenylation of the MT-ND3 mRNA. Nucleic Acids Res. (2024)

Release Date

2025-01-15

Peptides

Maltose/maltodextrin-binding periplasmic protein,FAST kinase domain-containing protein 4,FAST kinase domain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Maltose/maltodextrin-binding periplasmic protein,FAST kinase domain-containing protein 4,FAST kinase domain-containing protein 4