SMTL ID : 9gfk.1

human MDM2 complex with stapled foldamer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-4-4-mer

Ligands

3 x SO4: SULFATE ION

SO4.1: 3 residues within 4Å: Chain B: K.16, P.17, L.18 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.18 Water bridges: B:L.19, B:N.91, B:N.91 SO4.2: 3 residues within 4Å: Chain C: K.16, P.17, L.18 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:L.18 SO4.3: 3 residues within 4Å: Chain D: K.16, P.17, L.18 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:L.18 Water bridges: D:L.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neuville, M. et al., Optimal Stapling of a Helical Peptide-Foldamer Hybrid Using a C-Terminal 4-Mercaptoproline Enhances Protein Surface Recognition and Cellular Activity. Chemistry (2025)

Release Date

2025-03-26

Peptides

E3 ubiquitin-protein ligase Mdm2: ABCD
Stapled foldamer: EFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
J

F
F

G
G

H
H

E3 ubiquitin-protein ligase Mdm2

Stapled foldamer