SMTL ID : 9ggb.1

Structure of the G848S mutant of human mitochondrial DNA polymerase gamma in complex with PZL-A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-mer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.872, V.873, D.1117 Ligands: DCP.2 Protein-ligand interaction information (PLIP) not available

1 x DCP: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE(Non-covalent)

DCP.2: 17 residues within 4Å: Chain A: R.835, D.872, V.873, D.874, S.875, Q.876, E.877, H.914, R.925, K.929, I.930, Y.933, D.1117 Chain D: C.25 Chain E: G.15, G.16 Ligands: CA.1 Protein-ligand interaction information (PLIP) not available

1 x 01: 1-[(4S)-8-chloranyl-3,4-dihydro-2H-chromen-4-yl]-3-(1-phenylpyrazol-3-yl)urea

01.3: 19 residues within 4Å: Chain A: Q.546, H.547, L.548, H.551, Y.555, P.560, L.562, W.567, P.569, G.570 Chain B: F.415, L.431, S.433, T.436, M.438, E.440, M.442, F.450, Y.454 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valenzuela, S. et al., Small molecules restore mutant mitochondrial DNA polymerase activity. Nature (2025)

Release Date

2025-04-16

Peptides

DNA polymerase subunit gamma-1: A
DNA polymerase subunit gamma-2: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DNA polymerase subunit gamma-1

DNA polymerase subunit gamma-2

Related Entries With Identical Sequence