SMTL ID : 9gh5.1

Complex of Fusobacterium nucleatum CbpF with human CEACAM1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain D: V.21, Y.68, N.70, S.72 Ligand excluded by PLIP NAG.2: 1 residues within 4Å: Chain D: N.77 Ligand excluded by PLIP NAG.3: 2 residues within 4Å: Chain D: W.145, N.148 Ligand excluded by PLIP NAG.4: 3 residues within 4Å: Chain D: Y.142, L.159, N.163 Ligand excluded by PLIP NAG.5: 6 residues within 4Å: Chain D: N.118, N.119, D.127, A.128, V.129, A.130 Ligand excluded by PLIP NAG.6: 7 residues within 4Å: Chain D: E.109, L.110, P.111, K.112, S.188, A.189, N.190 Ligand excluded by PLIP NAG.7: 4 residues within 4Å: Chain E: V.21, Y.68, N.70, S.72 Ligand excluded by PLIP NAG.8: 1 residues within 4Å: Chain E: N.77 Ligand excluded by PLIP NAG.9: 2 residues within 4Å: Chain E: W.145, N.148 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain E: L.159, N.163 Ligand excluded by PLIP NAG.11: 6 residues within 4Å: Chain E: N.118, N.119, D.127, A.128, V.129, A.130 Ligand excluded by PLIP NAG.12: 7 residues within 4Å: Chain E: E.109, L.110, P.111, K.112, S.188, A.189, N.190 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain F: Y.68, N.70, S.72 Ligand excluded by PLIP NAG.14: 1 residues within 4Å: Chain F: N.77 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain F: W.145, N.148 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain F: Y.142, L.159, N.163 Ligand excluded by PLIP NAG.17: 5 residues within 4Å: Chain F: N.118, D.127, A.128, V.129, A.130 Ligand excluded by PLIP NAG.18: 7 residues within 4Å: Chain F: E.109, L.110, P.111, K.112, S.188, A.189, N.190 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marongiu, G.L. et al., Structural basis for immune cell binding of Fusobacterium nucleatum via the trimeric autotransporter adhesin CbpF. Proc.Natl.Acad.Sci.USA (2025)

Release Date

2025-04-02

Peptides

Cell surface protein: ABC
Carcinoembryonic antigen-related cell adhesion molecule 1: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Cell surface protein

Carcinoembryonic antigen-related cell adhesion molecule 1

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