SMTL ID : 9gho.1

Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of S284A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: A.284, A.285, L.286 Chain B: A.284, A.285, L.286 Ligands: CL.4 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain A: A.284, A.285, L.286 Chain B: A.284, A.285, L.286 Ligands: CL.1 Ligand excluded by PLIP

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: Q.74, L.75, R.76 No protein-ligand interaction detected (PLIP) DMS.3: 6 residues within 4Å: Chain A: M.6, A.7, F.8, Q.127, R.298 Chain B: S.123 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.298 Salt bridges: A:D.295 pi-Cation interactions: A:F.8 DMS.5: 3 residues within 4Å: Chain B: Q.74, L.75, R.76 No protein-ligand interaction detected (PLIP) DMS.6: 6 residues within 4Å: Chain A: S.123 Chain B: M.6, A.7, F.8, Q.127, R.298 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.298 Salt bridges: B:D.295 pi-Cation interactions: B:F.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Creon, A. et al., Structure of SARS-CoV-2 Main Protease (Mpro) with mutation of S284A. To Be Published

Release Date

2025-09-03

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

3C-like proteinase nsp5