SMTL ID : 9ghy.1

Cyclophilin A in complex with Sanglifehrin A analogue (2R,3S,7S,10S,E)-10-(3-aminopropyl)-2,7-dimethylspiro[3,8,11-triaza-1(2,7)-quinolina-5(3,1)-pyridazinacyclopentadecaphanene-13,5'-[1,3]dioxan]-14-ene-4,6,9,12-tetraone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x 01: (2R,3S,7S,10S,E)-10-(3-aminopropyl)-2,7-dimethylspiro[3,8,11-triaza-1(2,7)-quinolina-5(3,1)-pyridazinacyclopentadecaphanene-13,5'-[1,3]dioxan]-14-ene-4,6,9,12-tetraone

01.1: 16 residues within 4Å: Chain A: R.57, I.59, F.62, M.63, Q.65, G.74, T.75, G.76, A.103, N.104, A.105, Q.113, F.115, L.124, H.128 Ligands: CL.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.62, A:F.115 Hydrogen bonds: A:R.57, A:R.57, A:Q.65, A:G.76, A:N.104, A:N.104 pi-Cation interactions: A:R.57

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 6 residues within 4Å: Chain A: G.76, G.77, G.111, S.112, Q.113 Ligands: 01.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dreizler, J.K. et al., Toward Dual Targeting of Catalytic and Gatekeeper Pockets in Cyclophilins Using a Macrocyclic Scaffold. Acs Med.Chem.Lett. (2024)

Release Date

2024-11-06

Peptides

Peptidyl-prolyl cis-trans isomerase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase A

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