SMTL ID : 9gic.1

NMDA bound to compound 345

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x 01: (2~{R})-2-azanyl-3-[[3-(phenylmethyl)-2~{H}-thiophen-5-yl]carbonylamino]propanoic acid

01.1: 18 residues within 4Å: Chain A: F.91, P.123, L.124, T.125, I.126, N.127, R.130, Q.143, L.145, S.178, S.179, V.180, Y.183, W.222, D.223, F.245, S.247, F.249 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:N.127, A:Y.183, A:F.245, A:F.245 Hydrogen bonds: A:P.123, A:T.125, A:T.125, A:S.179, A:D.223 Salt bridges: A:R.130 pi-Stacking: A:Y.183

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: F.229, S.232, Q.233, W.283, V.284, R.285, Y.286, Q.287 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.229, A:Y.286, A:Y.286, A:Q.287 Water bridges: A:Q.287 SO4.3: 4 residues within 4Å: Chain A: K.141, Y.142, D.280, R.285 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.142, A:D.280 Water bridges: A:K.141, A:K.141, A:K.141 Salt bridges: A:K.141, A:R.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ascic, E. et al., Advancements in NMDA Receptor-Targeted Antidepressants: From d-Cycloserine Discovery to Preclinical Efficacy of Lu AF90103. J.Med.Chem. (2024)

Release Date

2024-11-27

Peptides

Glutamate receptor ionotropic, NMDA 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate receptor ionotropic, NMDA 1

Related Entries With Identical Sequence