SMTL ID : 9gid.1

NMDA bound to compound 338

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 01: (2~{R})-2-azanyl-3-[(7-bromanyl-4-fluoranyl-3~{H}-1-benzothiophen-2-yl)carbonylamino]propanoic acid

01.1: 19 residues within 4Å: Chain A: F.91, P.123, L.124, T.125, R.130, Q.143, G.144, L.145, S.178, S.179, V.180, Y.183, W.222, D.223, F.244, F.245, R.246, S.247, F.249 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.125, A:L.145, A:F.245 Hydrogen bonds: A:T.125, A:T.125, A:S.179, A:V.180, A:D.223 Salt bridges: A:R.130 Halogen bonds: A:Q.143

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.141, Y.142, D.280, R.285 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.142, A:D.280 Water bridges: A:D.280, A:D.280 Salt bridges: A:K.141, A:R.285 SO4.3: 8 residues within 4Å: Chain A: F.229, S.232, Q.233, W.283, V.284, R.285, Y.286, Q.287 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.286, A:Y.286, A:Y.286, A:Q.287, A:Q.287 Water bridges: A:Q.287

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ascic, E. et al., Advancements in NMDA Receptor-Targeted Antidepressants: From d-Cycloserine Discovery to Preclinical Efficacy of Lu AF90103. J.Med.Chem. (2024)

Release Date

2024-11-27

Peptides

Glutamate receptor ionotropic, NMDA 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate receptor ionotropic, NMDA 1

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