SMTL ID : 9gie.1

NMDA bound to compound 315

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-dimer

Ligands

2 x 01: (2~{R})-2-azanyl-3-[[4-(2-ethylphenyl)-2,3-dihydro-1~{H}-indol-2-yl]carbonylamino]propanoic acid

01.1: 22 residues within 4Å: Chain A: F.91, P.123, L.124, T.125, N.127, N.128, R.130, Q.143, G.144, L.145, S.178, S.179, V.180, Y.183, W.222, D.223, F.244, F.245, R.246, S.247, F.249 Chain B: E.272 19 PLIP interactions: 18 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.125, A:N.127, A:L.145, A:Y.183, A:Y.183, A:F.244, A:F.245, B:E.272 Hydrogen bonds: A:T.125, A:T.125, A:S.179, A:V.180, A:D.223, A:D.223 Water bridges: A:Q.143, A:D.223 Salt bridges: A:R.130 pi-Stacking: A:Y.183, A:F.245 01.2: 23 residues within 4Å: Chain A: E.272 Chain B: F.91, P.123, L.124, T.125, N.127, N.128, R.130, Q.143, G.144, L.145, S.178, S.179, V.180, Y.183, F.184, W.222, D.223, F.244, F.245, R.246, S.247, F.249 17 PLIP interactions: 16 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.125, B:N.127, B:L.145, B:L.145, B:Y.183, B:F.245, B:F.245, A:E.272 Hydrogen bonds: B:T.125, B:S.179, B:V.180, B:D.223, B:D.223, B:D.223 Water bridges: B:D.223 Salt bridges: B:R.130 pi-Stacking: B:Y.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ascic, E. et al., Advancements in NMDA Receptor-Targeted Antidepressants: From d-Cycloserine Discovery to Preclinical Efficacy of Lu AF90103. J.Med.Chem. (2024)

Release Date

2024-11-27

Peptides

Glutamate receptor ionotropic, NMDA 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutamate receptor ionotropic, NMDA 1

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