SMTL ID : 9gif.1

NMDA bound to compound 288

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 01: (2~{R})-2-azanyl-3-(2~{H}-thiophen-5-ylcarbonylamino)propanoic acid

01.1: 17 residues within 4Å: Chain A: F.91, P.123, L.124, T.125, R.130, Q.143, G.144, L.145, S.178, S.179, V.180, Y.183, W.222, D.223, F.245, S.247, F.249 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.125, A:L.145, A:L.145 Hydrogen bonds: A:P.123, A:T.125, A:T.125, A:S.179, A:D.223 Salt bridges: A:R.130 pi-Stacking: A:Y.183

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.141, Y.142, D.280, R.285 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Y.142, A:D.280 Water bridges: A:K.141, A:D.280, A:D.280, A:R.285, A:R.285, A:R.285 Salt bridges: A:K.141, A:R.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ascic, E. et al., Advancements in NMDA Receptor-Targeted Antidepressants: From d-Cycloserine Discovery to Preclinical Efficacy of Lu AF90103. J.Med.Chem. (2024)

Release Date

2024-11-27

Peptides

Glutamate receptor ionotropic, NMDA 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glutamate receptor ionotropic, NMDA 1

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